Import of biomedical images in third party software using Bio-formats
Dmitry A. Myagkov 1, Egor V. Ilyukov 1, Dmitry V. Tuktarov 1, Ivan V. Fedosov1, Oxana V. Semyachkina-Glushkovskaya2,3 1 Institute of Physics, , Saratov State University, Universitetskaya, 40, , 410012 Saratov, Russia 2 Department of Biology, Saratov State University, Astrakhanskaya 82, 410012 Saratov, Russia 3 Institute of Physics, Humboldt University, Newtonstrasse 15, 12489 Berlin, Germany.
Abstract
Open source Java library Bio-formats is a convenient instrument widely used for biomedical imaging data conversion and import. Typically image processing is performed using Java based FIJI open-source software package that provides versatile instrumentation for image processing. But for certain applications like graphic user interface based interactive image analysis FIJI functionality is limited and requires elaborate development of Java GUIs.
We present interactive frequency domain image filtering software that utilizes Bio-formats for import of native large biomedical microscopy image data. Native file import library was developed for interactive LabVIEW based GUI interactive image processing software.
The use of the library enables fast interactive suppression of fringe like image recording artifacts over large multidimensional images.
This study was supported by grant from SRF 23-75-30001
Speaker
Dmitry A. Myagkov
Institute of Physics, Saratov State University
Russian Federation
Discussion
Ask question
